CATRIN-BIO

Plant-Environment Interactions

Understanding plant responses to multifactorial environmental stresses and developing tools for more resilient crops.
Research Areas
Nuria De Diego Sanchez, Ph.D.
Group leader
Phone +420585634855
E-mail nuria.de@upol.cz

About the group

As sessile organisms, plants have developed various strategies to cope with the adverse conditions surrounding them. These environmental conditions include a mix of biotic and abiotic stressors that often act simultaneously and can induce opposing plant reactions. Our group is dedicated to understanding plants’ diverse strategies following their morphological, physiological, and biochemical responses to navigate these complex conditions, aiming to improve resistance and reduce yield losses.

Our group boasts the state-of-the-art (semi)automated plant phenotyping facility Olophen, which allows us to study thousands of plants in a single run under combined stress conditions using non-invasive imaging-based approaches. Additionally, we operate a phytochemical analysis facility for quantifying a wide range of primary and secondary metabolites. Combined with our phenotyping data, this information provides a comprehensive view of plant resistance mechanisms to both abiotic and biotic stresses. Both facilities support our own and collaborative research with academic and industrial partners.

We are actively involved in various European and national projects to develop new technologies for rapidly analyzing the morphological and physiological traits of plants under different stress conditions using various sensors. Our efforts include development of affordable in-house phenotyping systems, as well as software and hardware solutions to address specific bottlenecks of phenotyping pipeline, including data analysis and processing following FAIR principles. Recently, we have integrated artificial intelligence and machine learning approaches to enhance our pipeline further.

Our research covers topics ranging from fundamental to applied research and extends beyond model plants such as Arabidopsis, barley, and maize. We also focus on other agronomically important species in collaboration with our global collaboration network that specializes in specific crops and related challenges connected to plant protection and human health. These crops include potato, rapeseed, and cannabis, among others.

Through these multifaceted efforts, our group aims to advance plant science and develop resilient crops capable of withstanding environmental challenges. These contributions support the Sustainable Development Goals (SDGs), including climate action, life on land, and zero hunger.

News

List of Employees

Name Academic title E-mail Phone Position
Nuria De Diego Sanchez Ph.D. nuria.de@upol.cz +420585634855 Group leader
Lukáš Spíchal Mgr., Ph.D. lukas.spichal@upol.cz +420585634290
Lisney Alessandra Bastidas Parrado MSc. lisneyalessandra.bastidasparrado@upol.cz
Radana Báťková radana.batkova@upol.cz
Tibor Béres Mgr., Ph.D. tibor.beres@upol.cz +420731742220
Sanja Ćavar Zeljković Ing., Ph.D. sanja.cavar@upol.cz
Petra Fialová RNDr., Ph.D. petra.fialova@upol.cz +420585634895
Francisco Ignacio Jasso Robles Ph.D. franciscoignacio.jassorobles@upol.cz
Ivana Jovanović Ph.D. ivana.jovanovic@upol.cz
Jana Kholová Mgr., Ph.D. jana.kholova@upol.cz
Lucie Kihslingová Ing. lucie.kihslingova@upol.cz
Tomasz Bogdan Kleczkowski MSc. tomasz.kleczkowski@upol.cz
Pavel Klimeš Mgr., Ph.D. pavel.klimes@upol.cz +420585634899
Štěpán Krejčí Mgr. stepan.krejci@upol.cz
Mariana Morquecho Robledo MSc. mariana.morquechorobledo@upol.cz
Jaroslav Nisler Mgr., Ph.D. jaroslav.nisler@upol.cz +420608122530
Jana Nosková Mgr. jana.noskova@upol.cz +420585634830
Irena Petrželová RNDr., Ph.D. irena.petrzelova@upol.cz +420585634824
Monika Rozehnalová Mgr., Ph.D. monika.rozehnalova@upol.cz +420585634677
Iňigo Saiz Fernández Ph.D. inigo.saizfernandez@upol.cz
Tereza Schlattauerová Mgr. tereza.schlattauerova@upol.cz
Petr Tarkowski doc. RNDr., Ph.D. petr.tarkowski@upol.cz +420585634677
Abhishek Mani Tripathi Ph.D. abhishekmani.tripathi@upol.cz
Markéta Ulbrichová Mgr., Ph.D. marketa.ulbrichova@upol.cz +420585634899

Group publications

D. Ko, R. Ruonala, A. Faille, E. Hellmann, H. Help, H. Liu, R. Nielsen, A. Haakonsson, N. De Diego, A. Paatero, M. V. Shcherbii, K. Stefanowicz, S. Ćavar Zeljković, T. Drud Lundager Rasmussen, O. Novak, Z. Bodi, G. Eswaran, B. Wybouw, M. Bourdon, C. Urbez, X. Liu, K. Salokas, T. Öhman, T. Waldie, P. Törönen, S. el-Showk, M. Balcerowicz, F. Besnard, X. Liu, P. Perkins, S. Mazzoni-Putman, J. P. Vainonen, M. Sierla, M. J. Frilander, S. Mandrup, T. Vernoux, K. Ljung, A. Ferrando, M. A. Blazquez, L. Holm, R. Fray, M. Varjosalo, O. Leyser, V. O. Paavilainen, A. P. Mähönen, A. Stepanova, J. Alonso, S. Heber, R. Malinowski, F. Kirpekar, A. J. Warren and Y. Helariutta
"Recruitment of bifunctional regulator thermospermine to methylated ribosomes directs xylem fate",
SCIENCE, vol. 391, iss. 6786, pp. 694-699, 2026.
IF = 47.3
A. Bucksch, Y. S. Chung, J. L. Clarke, S. Gerth, P. von Gillhaussen, W. GUO, J. Kholová, S. Pariyar, E. Pickering, S. Sankaran, S. Shafiee, S. A. Cervantes-Perez, S. Dhondt, Z. Han, K. Hossain, W. LaVoy, J. P. Lynch, S. Negrão, T. Pridmore, H. Schneider, S. Schwartz, I. Stavness, S. Sun, V. Vadez, L. West and R. van de Zedde
"Plant Phenomics—the unrecognized rise of a scientific discipline",
TRENDS IN PLANT SCIENCE, Article in press, 2026.
IF = 21.2
R. Arshad, I. Skalidis, D. Kopečný, S. Brabencová, M. Opatíková, P. Ilík, P. Pospíšil, F. Hamdi, S. Ćavar Zeljković, M. Kopečná, P. Roudnický, D. Lazár, E. Elias, R. Croce, P. L. Kastritis and R. Kouřil
"Cryo-EM structure of photosystem II supercomplex from a green microalga with extreme phototolerance",
NATURE COMMUNICATIONS, vol. 17, article no. 341, 2026.
IF = 18.1
D. Panáček, V. Kupka, M. Nalepa, I. Dědek, R. Álvarez-Diduk, S. Olenik, J. Flauzino, J. Zdražil, P. Jakubec, L. Zdražil, L. Spíchal, K. K. Sonigara, R. Zbořil, M. Pumera, A. Merkoçi, J. Wang, N. De Diego, F. Güder and M. Otyepka
"Printing technologies for monitoring crop health",
NATURE COMMUNICATIONS, vol. 17, article no. 2009, 2026.
IF = 18.1
S. Arya, L. Spíchal and R. Zbořil
"Flying seed-inspired sensors for remote environmental monitoring on Earth and beyond",
TRENDS IN BIOTECHNOLOGY, vol. 44, iss. 5, pp. 1214-1229, 2026.
IF = 16.6
L. Kong, J. Zdražil, N. De Diego, F. Ignacio Jasso Robles, V. Snášel, S. Das and J. Pan
"Leveraging Feature Alignment in Grassmannian Manifold for Multi-Output Regression Tasks",
IEEE TRANSACTIONS ON IMAGE PROCESSING, vol. 35, pp. 5804-5817, 2026.
IF = 15.3
All group publications